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Phylogenetic Analysis of the 2020 West Nile Virus (WNV) Outbreak in Andalusia (Spain)

dc.contributor.authorCasimiro Soriguer, Carlos S.
dc.contributor.authorPedrosa Corral, Irene
dc.contributor.authorGuillot Sulay, Vicente
dc.contributor.authorMartínez González, Luis Javier 
dc.contributor.authorNavarro Marí, José María
dc.contributor.authorSanbonmatsu Gámez, Sara
dc.date.accessioned2021-06-11T10:29:06Z
dc.date.available2021-06-11T10:29:06Z
dc.date.issued2021-05-05
dc.identifier.citationCasimiro-Soriguer, C.S.; Perez-Florido, J.; Fernandez-Rueda, J.L.; Pedrosa-Corral, I.; Guillot-Sulay, V.; Lorusso, N.; Martinez-Gonzalez, L.J.; Navarro-Marí, J.M.; Dopazo, J.; Sanbonmatsu-Gámez, S. Phylogenetic Analysis of the 2020West Nile Virus (WNV) Outbreak in Andalusia (Spain). Viruses 2021, 13, 836. [https://doi.org/10.3390/v13050836]es_ES
dc.identifier.urihttp://hdl.handle.net/10481/69128
dc.descriptionThis research was funded by grants PT17/0009/0006 from the ISCIII, co-funded by the European Regional Development Fund (ERDF) as well as H2020 "ELIXIR-EXCELERATE fast-track ELIXIR implementation and drive early user exploitation across the life sciences" (GA 676559).es_ES
dc.description.abstractDuring recent decades West Nile Virus (WNV) outbreaks have continuously occurred in the Mediterranean area. In August 2020 a new WNV outbreak affected 71 people with meningoencephalitis in Andalusia and six more cases were detected in Extremadura (south-west of Spain), causing a total of eight deaths. The whole genomes of four viruses were obtained and phylogenetically analyzed in the context of recent outbreaks. The Andalusian viral samples belonged to lineage 1 and were relatively similar to those of previous outbreaks which occurred in the Mediterranean region. Here we present a detailed analysis of the outbreak, including an extensive phylogenetic study. As part on this effort, we implemented a local Nextstrain server, which has become a constituent piece of regional epidemiological surveillance, wherein forthcoming genomes of environmental samples or, eventually, future outbreaks, will be included.es_ES
dc.description.sponsorshipInstituto de Salud Carlos III PT17/0009/0006es_ES
dc.description.sponsorshipEuropean Commissiones_ES
dc.description.sponsorshipH2020 "ELIXIR-EXCELERATE fast-track ELIXIR implementation and drive early user exploitation across the life sciences" 676559es_ES
dc.language.isoenges_ES
dc.publisherMDPIes_ES
dc.rightsAtribución 3.0 España*
dc.rights.urihttp://creativecommons.org/licenses/by/3.0/es/*
dc.subjectWest Nile Viruses_ES
dc.subjectOutbreakes_ES
dc.subjectMeningoencephalitis es_ES
dc.subjectEpidemiology es_ES
dc.subjectPhylogeny es_ES
dc.subjectWhole genome sequencinges_ES
dc.titlePhylogenetic Analysis of the 2020 West Nile Virus (WNV) Outbreak in Andalusia (Spain)es_ES
dc.typeinfo:eu-repo/semantics/articlees_ES
dc.relation.projectIDinfo:eu-repo/grantAgreement/EC/H2020/676559es_ES
dc.rights.accessRightsinfo:eu-repo/semantics/openAccesses_ES
dc.identifier.doi10.3390/v13050836
dc.type.hasVersioninfo:eu-repo/semantics/publishedVersiones_ES


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Except where otherwise noted, this item's license is described as Atribución 3.0 España