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ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ

dc.contributor.authorVal Muñoz, María Coral Del 
dc.contributor.authorErnst, P.
dc.contributor.authorFalkenhahn, M.
dc.contributor.authorFladerer, C.
dc.contributor.authorGlatting, K. H.
dc.contributor.authorSuhai, S.
dc.contributor.authorHotz-Wagenblatt, A.
dc.date.accessioned2014-07-24T11:55:15Z
dc.date.available2014-07-24T11:55:15Z
dc.date.issued2007
dc.identifier.citationVal, C.; et al. ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ. Nucleic Acid Research, 35(S): 444-450 (2007). [http://hdl.handle.net/10481/32769]es_ES
dc.identifier.issn0305-1048
dc.identifier.urihttp://hdl.handle.net/10481/32769
dc.description.abstractThe wealth of transcript information that has been made publicly available in recent years has led to large pools of individual web sites offering access to bioinformatics software. However, finding out which services exist, what they can or cannot do, how to use them and how to feed results from one service to the next one in the right format can be very time and resource consuming, especially for non-experts. Automating this task, we present a suite of protein annotation pipelines (tasks) developed at the German Cancer Research Centre (DKFZ) oriented to protein annotation by homology (ProtSweep), by domain analysis (DomainSweep), and by secondary structure elements (2Dsweep). The aim of these tasks is to perform an exhaustive structural and functional analysis employing a wide variety of methods in combination with the most updated public databases. The three servers are available for academic users at the HUSAR open server http://genius.embnet.dkfz-heidelberg.de/menu/biounit/open-husar/es_ES
dc.description.sponsorshipThe program of ‘Retorno de Investigadores de la Junta de Andalucia’ financed Dr C. del Val. Funding to pay the Open Access publication charges for this article was provided by Dep. Molecular Biophysics, Deutsches Krebsforschungszentrum.es_ES
dc.language.isoenges_ES
dc.publisherOxford University Presses_ES
dc.rightsCreative Commons Attribution-NonCommercial-NoDerivs 3.0 Licensees_ES
dc.rights.urihttp://creativecommons.org/licenses/by-nc-nd/3.0/es_ES
dc.subjectSecondary structure predictiones_ES
dc.subjectDatabasees_ES
dc.subjectIdentification es_ES
dc.subjectAnnotationes_ES
dc.subjectInterfacees_ES
dc.subjectGenes es_ES
dc.titleProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZes_ES
dc.typejournal articlees_ES
dc.rights.accessRightsopen accesses_ES
dc.identifier.doi10.1093/nar/gkm364


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