ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ

Identificadores
URI: http://hdl.handle.net/10481/32769
ISSN: 0305-1048
Exportar
RISMendeleyBibtex
Estadísticas
View Usage Statistics
Metadata
Show full item record
Author
Val Muñoz, María Coral Del; Ernst, P.; Falkenhahn, M.; Fladerer, C.; Glatting, K. H.; Suhai, S.; Hotz-Wagenblatt, A.
Editorial
Oxford University Press
Materia
Secondary structure prediction
 
Database
 
Identification
 
Annotation
 
Interface
 
Genes
 
Date
2007
Referencia bibliográfica
Val, C.; et al. ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ. Nucleic Acid Research, 35(S): 444-450 (2007). [http://hdl.handle.net/10481/32769]
Sponsorship
The program of ‘Retorno de Investigadores de la Junta de Andalucia’ financed Dr C. del Val. Funding to pay the Open Access publication charges for this article was provided by Dep. Molecular Biophysics, Deutsches Krebsforschungszentrum.
Abstract
The wealth of transcript information that has been made publicly available in recent years has led to large pools of individual web sites offering access to bioinformatics software. However, finding out which services exist, what they can or cannot do, how to use them and how to feed results from one service to the next one in the right format can be very time and resource consuming, especially for non-experts. Automating this task, we present a suite of protein annotation pipelines (tasks) developed at the German Cancer Research Centre (DKFZ) oriented to protein annotation by homology (ProtSweep), by domain analysis (DomainSweep), and by secondary structure elements (2Dsweep). The aim of these tasks is to perform an exhaustive structural and functional analysis employing a wide variety of methods in combination with the most updated public databases. The three servers are available for academic users at the HUSAR open server http://genius.embnet.dkfz-heidelberg.de/menu/biounit/open-husar/
Collections
Creative Commons Attribution-NonCommercial-NoDerivs 3.0 License
Except where otherwise noted, this item's license is described as Creative Commons Attribution-NonCommercial-NoDerivs 3.0 License