Bayesian Harmonic Modelling of Sparse and Irregular Satellite Remote Sensing Time Series of Vegetation Indexes: A Story of Clouds and Fires Vicario, Saverio Adamo, Maria Alcaraz Segura, Domingo Tarantino, Cristina Time-Series MSAVI2 Cloud cover Ecosystem Functional Attributes (EFA) We would like to thank the ReCAS Computing Center of the University of Bari, and, particularly, Stefano Nicotri and Giacinto Donvito for the use of facilities; in particular their Jupiter online access to the virtual environment for computation. The manuscript was proofread by Lena Rettori. We would like to thanks the contribution of the two anonymous reviewers. Vegetation index time series from Landsat and Sentinel-2 have great potential for following the dynamics of ecosystems and are the key to develop essential variables in the realm of biodiversity. Unfortunately, the removal of pixels covered mainly by clouds reduces the temporal resolution, producing irregularity in time series of satellite images. We propose a Bayesian approach based on a harmonic model, fitted on an annual base. To deal with data sparsity, we introduce hierarchical prior distribution that integrate information across the years. From the model, the mean and standard deviation of yearly Ecosystem Functional Attributes (i.e., mean, standard deviation, and peak’s day) plus the inter-year standard deviation are calculated. Accuracy is evaluated with a simulation that uses real cloud patterns found in the Peneda-Gêres National Park, Portugal. Sensitivity to the model’s abrupt change is evaluated against a record of multiple forest fires in the Bosco Difesa Grande Regional Park in Italy and in comparison with the BFAST software output. We evaluated the sensitivity in dealing with mixed patch of land cover by comparing yearly statistics from Landsat at 30m resolution, with a 2m resolution land cover of Murgia Alta National Park (Italy) using FAO Land Cover Classification System 2. 2020-03-26T07:41:59Z 2020-03-26T07:41:59Z 2019-12-24 info:eu-repo/semantics/article Vicario, S.; Adamo, M.; Alcaraz-Segura, D.; Tarantino, C. Bayesian Harmonic Modelling of Sparse and Irregular Satellite Remote Sensing Time Series of Vegetation Indexes: A Story of Clouds and Fires. Remote Sens. 2020, 12, 83. [doi:10.3390/rs12010083] http://hdl.handle.net/10481/60637 10.3390/rs12010083 eng EC/H2020/641762 http://creativecommons.org/licenses/by/3.0/es/ info:eu-repo/semantics/openAccess Atribución 3.0 España MDPI