@misc{10481/72314, year = {2021}, month = {12}, url = {http://hdl.handle.net/10481/72314}, abstract = {Primary Sjögren’s syndrome (SS) is a systemic autoimmune disease characterized by lymphocytic infiltration and damage of exocrine salivary and lacrimal glands. The etiology of SS is complex with environmental triggers and genetic factors involved. By conducting an integrated multi-omics study, we confirmed a vast coordinated hypomethylation and overexpression effects in IFN-related genes, what is known as the IFN signature. Stratified and conditional analyses suggest a strong interaction between SS-associated HLA genetic variation and the presence of Anti-Ro/SSA autoantibodies in driving the IFN epigenetic signature and determining SS. We report a novel epigenetic signature characterized by increased DNA methylation levels in a large number of genes enriched in pathways such as collagen metabolism and extracellular matrix organization. We identified potential new genetic variants associated with SS that might mediate their risk by altering DNA methylation or gene expression patterns, as well as disease-interacting genetic variants that exhibit regulatory function only in the SS population. Our study sheds new light on the interaction between genetics, autoantibody profiles, DNA methylation and gene expression in SS, and contributes to elucidate the genetic architecture of gene regulation in an autoimmune population.}, organization = {Innovative Medicines Initiative Joint Undertaking from the European Union's Seventh Framework Program (FP7/2007-2013) 115,565}, organization = {EFPIA companies}, organization = {Junta de Andalucia PI/0017/2016}, organization = {Innovative Medicines Initiative 2 Joint Undertaking 806975 European Union's Horizon 2020 research and innovation programme}, organization = {EFPIA}, organization = {Postdoctoral Training Subprogramme Juan de la Cierva-Ministry of Economy and Competitiveness FJCI_2014_20652}, publisher = {Nature}, title = {Integrative epigenomics in Sjögren´s syndrome reveals novel pathways and a strong interaction between the HLA, autoantibodies and the interferon signature}, doi = {10.1038/s41598-021-01324-0}, author = {Teruel Artacho, María and Barturen Briñas, Guillermo and Martínez Bueno, Manuel and Castellini Pérez, Olivia and Barroso Gil, Miguel and Povedano Espejo, Elena and Kerick, Martin and Marañón Lizana, Concepción and Martín Ibáñez, Javier and Carnero Montoro, Elena and Alarcón Riquelme, Marta Eugenia and Castro Villegas, Mª Carmen and Ortego Centeno, Norberto and Fernández Roldán, María Concepción and Raya Álvarez, Enrique Germán and Jiménez Moleón, Inmaculada and Rodríguez Maresca, Manuel and López Berrio, Antonio and Aguilar Quesada, Rocío and Navarro Linares, Héctor and Muchmore, Brian and PRECISESADS Clinical Consortium and PRECISESADS Flow Cytometry Study Group}, }